Publications

M. Boudreau, K.E. Keenan, N. Stikov, “T1/T1ρ mapping methods (opens in a new tab)”, Quantitative Magnetic Resonance Imaging (opens in a new tab), Editors: Mariya Doneva, Steven Sourbron, Fernando Calamante, Harry Houchun Hu, Adrienne Campbell. Elsevier. (2020).

M. Boudreau, A. Karakuzu, A. Boré, B. Pinsard, K. Zelenkovski, E. Alonso-Ortiz, J. Boyle, L. Bellec, J. Cohen-Adad, “Longitudinal reproducibility of brain and spinal cord quantitative MRI biomarkers (opens in a new tab)”, Imaging Neuroscience, 3 imag_a_00409 (2025).

D. Papp, K.M. Gilbert, G. Cereza, A. D'Astous, N. Lopez‐Rios, M. Boudreau, M.J. Couch, P. Yazdanbakhsh, R.L. Barry, E. Alonso‐Ortiz, J. Cohen‐Adad, “RF shimming in the cervical spinal cord at 7 T (opens in a new tab)”, Magnetic Resonance in Medicine, 92(6):2392-2403 (2024).

M. Boudreau, A. Karakuzu, J. Cohen‐Adad, E. Bozkurt, M. Carr, M. Castellaro, L. Concha, M. Doneva, S.A. Dual, A. Ensworth, A. Foias, V. Fortier, R.E. Gabr, G. Gilbert, C.K Glide‐Hurst, M. Grech‐Sollars, S. Hu, O. Jalnefjord, J. Jovicich, K. Keskin, P. Koken, A. Kolokotronis, S. Kukran, N.G. Lee, I.R. Levesque, B. Li, D. Ma, B. Mädler, N.G. Maforo, J. Near, E. Pasaye, A. Ramirez‐Manzanares, B. Statton, C. Stehning, S. Tambalo, Y. Tian, C. Wang, K. Weiss, N. Zakariaei, S. Zhang, Z. Zhao, N. Stikov, ISMRM Reproducible Research Study Group and the ISMRM Quantitative MR Study Group, “Repeat it without me: Crowdsourcing the T1 mapping common ground via the ISMRM reproducibility challenge (opens in a new tab)”, Magnetic Resonance in Medicine, 92(3): 1115-1127 (2024).

A. Karakuzu, N. Stikov and M. Boudreau, “Reproducible Research Practices in Magnetic Resonance Neuroimaging: A Review Informed by Advanced Language Models (opens in a new tab)”, Magnetic Resonance in Medical Science, rev. 2023-0174 (2024).

R.A. Poldrack, C.J. Markiewicz, S. Appelhoff, Y.K. Ashar, T. Auer, S. Baillet, S. Bansal, L. Beltrachini, C.G. Benar, G. Bertazzoli, S. Bhogawar, R.W. Blair, M. Bortoletto, M. Boudreau, T.L. Brooks, V.D. Calhoun, F.M. Castelli, P. Clement, A.L. Cohen, J. Cohen-Adad, S. D’Ambrosio, G. de Hollander, M. de la Iglesia-Vayá, A. de la Vega, A. Delorme, O. Devinsky, D. Draschkow, E. Paul Duff, E. DuPre, E. Earl, O. Esteban, F.W. Feingold, G. Flandin, A. Galassi, G. Gallitto, M. Ganz, R. Gau, J. Gholam, S.S. Ghosh, A. Giacomel, A.G. Gillman, P. Gleeson, A. Gramfort, S. Guay, G. Guidali, Y. O. Halchenko, D.A. Handwerker, N. Hardcastle, P. Herholz, D. Hermes, C.J. Honey, R.B. Innis, H.-I. Ioanas, A. Jahn, A. Karakuzu, D.B. Keator, G. Kiar, B. Kincses, A.R. Laird, J.C. Lau, A. Lazari, J.H. Legarreta, A. Li, X. Li, B.C. Love, H. Lu, E. Marcantoni, C. Maumet, G. Mazzamuto, S.L. Meisler, M. Mikkelsen, H. Mutsaerts, T.E. Nichols, A. Nikolaidis, G. Nilsonne, G. Niso, M. Norgaard, T.W. Okell, R. Oostenveld, E. Ort, P.J. Park, M. Pawlik, C.R. Pernet, F. Pestilli, J. Petr, C. Phillips, J.-B. Poline, L. Pollonini, P.R. Raamana, P. Ritter, G. Rizzo, K.A. Robbins, A.P. Rockhill, C. Rogers, A. Rokem, C. Rorden, A. Routier, J.M. Saborit-Torres, T. Salo, M. Schirner, R.E. Smith, T. Spisak, J. Sprenger, N.C. Swann, M. Szinte, S. Takerkart, B. Thirion, A.G. Thomas, S. Torabian, G. Varoquaux, B. Voytek, J. Welzel, M. Wilson, T. Yarkoni, K.J. Gorgolewski, “The past, present, and future of the brain imaging data structure (BIDS) (opens in a new tab)”, Imaging Neuroscience, 2: 1-19 (2024).

A. Karakuzu, S. Appelhoff, T. Auer, M. Boudreau, F. Feingold, A. Khan, A. Lazari, C. Markiewicz, M. Mulder, C. Phillips, T. Salo, N. Stikov, K. Whitaker, G. de Hollander, “qMRI-BIDS: an extension to the brain imaging data structure for quantitative magnetic resonance imaging data (opens in a new tab)”, Scientific Data 9 (1), 517 (2022).

E. Lousada, M. Boudreau, J. Cohen-Adad, B. Nait Oumesmar, E. Burguière, and C. Schreiweis, “Reduced Axon Calibre in the Associative Striatum of the Sapap3 Knockout Mouse (opens in a new tab)”, Brain Sciences, 11(10):1353 (2021).

A. L. Wong, N. Hricz, H. Malapati, N. von Guionneau, M. Wong, T. Harris, M. Boudreau, J. Cohen-Adad, S. Tuffaha, “A simple and robust method for automating analysis of naïve and regenerating peripheral nerves (opens in a new tab)”, PLoS ONE 16(7): e0248323 (2021).

Agah Karakuzu, M. Boudreau, Tanguy Duval, Tommy Boshkovski, Ilana R. Leppert, Jean-François Cabana, Ian Gagnon, Pascale Beliveau, G. Bruce Pike, Julien Cohen-Adad, Nikola Stikov, “qMRLab: Quantitative MRI analysis, under one umbrella (opens in a new tab)”, Journal of Open Source Software, 5(53), 2343 (2020).

M. Boudreau and G.B. Pike, “Sensitivity-Regularization of the Cramér-Rao Lower Bound to Minimize B1 Nonuniformity Effects in Quantitative Magnetization Transfer Imaging (opens in a new tab)”, Magnetic Resonance in Medicine, 80: 2560–2572 (2018).

J.S.W. Campbell, I.R. Leppert, S. Narayanan, M. Boudreau, T. Duval, J. Cohen-Adad, G.B. Pike, N. Stikov, “Promise and pitfalls of g-ratio estimation with MRI (opens in a new tab)”, NeuroImage, 182:80-96 (2018).

M. Boudreau, N. Stikov, G.B. Pike, “B1-Sensitivity Analysis of Quantitative Magnetization Transfer Imaging (opens in a new tab)”, Magnetic Resonance in Medicine, 79: 276-285 (2018).

M. Boudreau, C.L. Tardif, N. Stikov, W. Lee, J.G. Sled, G.B. Pike, “B1 Mapping for Bias-correction in Quantitative T1 Imaging of the Brain at 3 Tesla Using Standard Pulse Sequences (opens in a new tab)”, Journal of Magnetic Resonance Imaging, 46:1673-1682 (2017).

J.-F. Cabana, Y. Gu, M. Boudreau, I.R. Levesque, Y. Atchia, J.G. Sled, S. Narayanan, D.L. Arnold, G.B. Pike, J. Cohen-Adad, N. Stikov, “Quantitative Magnetization Transfer Imaging Made Easy with qMTLab: a Software for Data Simulation, Analysis and Visualization (opens in a new tab)”, Concepts in Magnetic Resonance Part A, 44A:263–277 (2015).

N. Stikov, J.S.W. Campbell, T. Stroh, M. Lavalée, S. Frey, J. Novek, S. Nuara, M.-K. Ho, B.J. Bedell, R.F. Dougherty, I.R. Leppert, M. Boudreau, S. Narayanan, T. Duval, J. Cohen-Adad, P.-A. Picard, A. Gasecka, D. Côté, G.B. Pike, “In vivo histology of the myelin g-ratio with magnetic resonance imaging (opens in a new tab)”, NeuroImage, 118:397-405 (2015).

N. Stikov, J.S.W. Campbell, T. Stroh, M. Lavalée, St. Frey, J. Novek, S. Nuara, M.-K. Ho, B.J. Bedell, R.F. Dougherty, I.R. Leppert, M. Boudreau, S. Narayanan, T. Duval, J. Cohen-Adad, P.-A. Picard, A. Gasecka, D. Côté, G.B. Pike, “Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum (opens in a new tab)”, Data in Brief, 4:368-373 (2015).

N. Stikov, M. Boudreau, I.R. Levesque, C.L. Tardif, J. Barral, G.B. Pike, “On the Accuracy of T1 Mapping: Searching for Common Ground (opens in a new tab)”, Magnetic Resonance in Medicine, 73:514-522 (2015).

M. Boudreau, X. Xu, G.E. Santyr, “Measurement of ¹²⁹Xe Gas Apparent Diffusion Coefficient Anisotropy in an Elastase-Instilled Rat Model of Emphysema (opens in a new tab)”, Magnetic Resonance in Medicine, 69:211-220 (2013).

X. Xu, M. Boudreau, A. Ouriadov, G.E. Santyr, “Mapping of ³He apparent diffusion coefficient anisotropy at sub-millisecond diffusion times in an elastase-instilled rat model of emphysema (opens in a new tab)”, Magnetic Resonance in Medicine, 67:1146-1153 (2012).

G. Beydaghyan, M. Boudreau, P.V. Ashrit, “Optical Properties and Electrochromic Response of Nanostructured Molybdenum Trioxide Films (opens in a new tab)”, Journal of Materials Research, 26:55-61 (2011).

G. Beydaghyan, M. Boudreau, J. Riordon, A. Haché, P.V. Ashrit, “Single-Material Multilayer with Enhanced Photoactivity (opens in a new tab)”, Applied Physics Letters, 97:163104 (2010).

M. Boudreau, N. Stikov, P. Jezzard, “On the open-source landscape of Magnetic Resonance in Medicine (opens in a new tab)”, Magnetic Resonance in Medicine, 88 (4), 1495-1497 (2022).

M. Boudreau, J.B. Poline, P. Bellec, N. Stikov, “On the open-source landscape of PLOS Computational Biology (opens in a new tab)”, PLOS Computational Biology 17 (2), e1008725 (2021).

M. Boudreau, “Editorial for ‘Scan-rescan repeatability and impact of B0 and B1 field non-uniformity corrections in single-point whole-brain macromolecular proton fraction mapping’ (opens in a new tab)”, Journal of Magnetic Resonance Imaging, 52: 954-955 (2020).

A. Collin, A. Boschet, M. Boudreau, J. Cohen-Adad, “Multi-Domain Data Aggregation for Axon and Myelin Segmentation in Histology Images”, arXiv:2409.11552 (2024).

A. Karakuzu, E. DuPre, L. Tetrel, P. Bermudez, M. Boudreau, M. Chin, J.-B. Poline, S. Das, P. Bellec, N. Stikov, “NeuroLibre: A preprint server for full-fledged reproducible neuroscience (opens in a new tab)”, OSF Preprints (2022).

M. Lubrano di Scandalea, C.S. Perone, M. Boudreau, J. Cohen-Adad, “Deep active learning for axon-myelin segmentation on histology data”, arXiv:1907.05143 (2019).

A. Collin, M. Boudreau, J. Cohen-Adad, “ASTIH: A collection of axon and myelin segmentation datasets from multiple histology studies”, Medical Imaging with Deep Learning Meeting (2026).

M. Boudreau, C. Pageot, N. Molinier, N. Laines-Medina, S. Rios, A. D'Astous, V. Callot, E. Alonso-Ortiz, J. Cohen-Adad, “Anatomy-Based Simulations of B0 Field Maps: A Large Database for Head and Spine Shim Coil Development”, Digital Poster, International Society for Magnetic Resonance in Medicine Meeting (2025).

M. Boudreau, A. Karakuzu, A. Boré, K. Zelenkovski, B. Pinsard, E. Alonso-Ortiz, J. Boyle, P. Bellec, J. Cohen-Adad, “Longitudinal stability of brain and spinal cord quantitative MRI measures”, Traditional Poster, International Society for Magnetic Resonance in Medicine Meeting (2023).

M. Boudreau, A. Karakuzu, J. Cohen-Adad, M. Carr, M. Doneva, S.A. Dual, D.B. Ennis, A. Ensworth, A. Foias, V. Fortier, G. Gilbert, M. Grech-Sollars, L. Holloway, S. Hu, O. Jalnefjord, P. Koken, A. Kolokotronis, S. Kukran, N. Lee, I.R. Levesque, D. Ma, B. Maedler, N. Maforo, K. Moulin, J. Near, R. Rai, B. Statton, C. Stehning, C. Wang, K. Weiss, N. Zakariaei, S. Zhang, N. Stikov, “Phantom Results of the ISMRM Joint RRSG-qMRSG Reproducibility Challenge on T1 mapping”, Digital Poster, International Society for Magnetic Resonance in Medicine Meeting (2023).

A.L. Wong, H. Malapati, N. Hricz, N. von Guionneau, M.J. Wong, T.G.W. Harris, M. Boudreau, J. Cohen-Adad, S. Tuffaha, “Streamlining Peripheral Nerve Axon Histomorphometry Using Machine Learning”, Poster, 2021 ASPN Nerve Week Program (2021).

M. Boudreau, S. Asenov, V. Sharma, A. Zaimi, J. Cohen-Adad, “AxonDeepSeg: Automatic Myelin and Axon Segmentation Using Deep Learning”, Poster, Organization for Human Brain Mapping Annual Meeting (2020).

A. Wong, H. Malapati, M. Wong, N. von Guionneau, M. Boudreau, J. Cohen-Adad, S. Tuffaha, “Neural Networks for Nerve Analysis: Streamlining Axon Histomorphometry Using Machine Learning”, Podium Presentation, Plastic Surgery Research Council (2020).

A. Karakuzu, M. Boudreau, J. Cohen-Adad, and N. Stikov, “Thinking outside the black box: A fully transparent T1 mapping pipeline”, Digital Poster, International Society for Magnetic Resonance in Medicine Meeting (2020).

M. McLean, R.M. Lebel, M.E. MacDonald, M. Boudreau, and G.B. Pike, “Accelerated quantitative magnetization transfer (qMT) imaging using compressed sensing and parallel imaging”, Digital Poster, International Society for Magnetic Resonance in Medicine Meeting (2020).

A. Karakuzu, G. de Hollander, S. Appelhoff, T. Auer, M. Boudreau, Franklin Feingold, A.R. Khan, A. Lazari, C. Phillips, N. Stikov, and K. Whitaker, “A joint-community effort to standardize quantitative MRI data: Updates from the BIDS extension proposal”, Digital Poster, International Society for Magnetic Resonance in Medicine Meeting (2020).

M. Boudreau, A. Karakuzu, I. Leppert, T. Boshkovski, T. Duval, J. Cohen-Adad, N. Stikov, “All you need is a browser: eliminating barriers to MRI education with open-source interactive tutorials”, Oral – Junior Fellow Challenge: Africa, International Society for Magnetic Resonance in Medicine Meeting (2019).

A. Karakuzu, M. Boudreau, T. Duval, I.R. Leppert, T. Boshkovski, J. Cohen-Adad, N. Stikov, “The qMRLab workflow: From acquisition to publication”, Digital Poster, International Society for Magnetic Resonance in Medicine Meeting (2019).

E. Lousada, M. Boudreau, C. Perone, J. Cohen-Adad, B. Nait Oumesmar, C. Schreiweis, E. Burguière, “Characterization of Cortico-Striatal Myelination in the Context of Pathological Repetitive Behaviours”, International Basal Ganglia Society Meeting (2019).

M. Lubrano di Scandalea, C.S. Perone, M. Boudreau, J. Cohen-Adad, “Deep Active Learning for Myelin Segmentation on Histology Data”, Poster, Montréal Artificial Intelligence and Neuroscience (MAIN) Conference (2018).

T. Duval, I.R. Leppert, J.-F. Cabana, M. Boudreau, I. Gagnon, G. Berestovoy, J. Cohen-Adad, N. Stikov, “Quantitative MRI made easy with qMRLab”, Poster, International Society for Magnetic Resonance in Medicine Meeting (2018).

M. Mclean, M.E. MacDonald, R.M. Lebel, M. Boudreau, B. Pike, “Accelerated z-Spectrum Imaging”, Oral, International Society for Magnetic Resonance in Medicine Meeting (2017).

J. Campbell, I.R. Leppert, M. Boudreau, S. Narayanan, T. Duval, J. Cohen-Adad, G.B. Pike, N. Stikov, “Myelin g-ratio imaging: promises and pitfalls”, Poster, International Society for Magnetic Resonance in Medicine Meeting (2016).

M. Boudreau, N. Stikov, G.B. Pike, “B1-Sensitivity Analysis of qMT”, Poster, International Society for Magnetic Resonance in Medicine Meeting (2015).

N. Stikov, J. Campbell, M. Boudreau, S. Narayanan, T. Stroh, S. Nuara, J. Novek, S. Frey, M.-K. Ho, B. Bedell, G.B. Pike, “In vivo histology of the myelin g-ratio”, Poster, Organization for Human Brain Mapping Annual Meeting (2014).

M. Boudreau, N. Stikov, G.B. Pike, “A B1-Insensitive qMT Protocol”, Poster, International Society for Magnetic Resonance in Medicine Meeting (2014).

M. Boudreau, C. Tardif, N. Stikov, G.B. Pike, “A Comparison of B1 Mapping Methods for T1 Mapping at 3T”, E-Poster, International Society for Magnetic Resonance in Medicine Meeting (2014).

M. Boudreau, N. Stikov, G.B. Pike, “Effect of Different T1 Mapping Techniques on a Quantitative Magnetization Transfer MRI Biomarker for Myelin Density”, Poster, endMS Conference (2013).

M. Boudreau, N. Stikov and G.B. Pike, “T1 Mapping: Should We Agree to Disagree?”, Poster, International Society for Magnetic Resonance in Medicine (2013).

M. Boudreau, X. Xu, W. Dominguez-Viqueira, and G. E. Santyr, “Measurement of ¹²⁹Xe Gas Apparent Diffusion Coefficient Anisotropy in an Elastase-Instilled Rat Model of Emphysema”, Poster, International Society for Magnetic Resonance in Medicine (2011).

M. Boudreau, X. Xu, G. E. Santyr, “¹²⁹Xe Apparent Diffusion Coefficient Anisotropy in Emphysema: Simulations using a 3-D Budded Cylinder Model”, Poster, International Functional Pulmonary Imaging Workshop (2011).

M. Boudreau, R. Kraayvanger, X. Xu, A. Ouriadov, G. E. Santyr, “Measurement of Ultra-Short and Long-Range ³He Apparent Diffusion Coefficients in an Elastase-Induced Rat Model of Emphysema”, Talk, Canadian Organization of Medical Physicists Annual Scientific Meeting (2010).

G. Beydaghyan, M. Boudreau, J. Riordon, A. Haché, P.V. Ashrit, “Strong Efficiency of Morphological Layers in Enhancing Photoactivity of Molybdenum Trioxide Films”, Talk, CAP (2010).

M. Boudreau, G. Beydaghyan, S. Gauvin, P.V. Ashrit, “Characterization of Bragg Mirrors Created with a Single Material Using the Glancing Angle Deposition (GLAD) Technique”, Poster, CAP (2009).

M. Boudreau, G. Beydaghyan, P.V. Ashrit, “Electrochromic Investigation of Dry Lithiated MoO3 Thin Films Nanostructured by Glancing Angle Deposition (GLAD)”, Talk, Atlantic Universities Physics & Astronomy Conference (2009).

M. Boudreau, “Validation and reproducibility in quantitative imaging of myelin microstructure”, Session: THE NEED FOR SPEED: Multimodal Neuroimaging Contributions to Assessment of in vivo Mapping of Neural Signal Conduction, Organization for Human Brain Mapping Society Meeting (2026).

M. Boudreau, “Introduction to qMRLab: An Open Source Tool for Quantitative MR Image Analysis”, VAST (Vascular Training) Science Communication Seminar (2024).

M. Boudreau, “Highlighting Reproducibility: NeuroLibre in MRM Highlights”, NeuroLibre Day (2024).

M. Boudreau, “Transcending the Limitations of Traditional Research Dissemination”, Member Initiated Symposium, Session: Unlocking Productivity & Impact in Teaching & Publishing II, International Society for Magnetic Resonance in Medicine Meeting (2024).

M. Boudreau, “Beyond the Horizon: Navigating Reproducible Research Practices in MRI with MRM Highlights”, MRI Together (2023).

M. Boudreau, A. Karakuzu, N. Stikov, “A scanner to publication workflow for magnetization transfer imaging using qMRLab”, Session: Member Initiated Tutorials, International Society for Magnetic Resonance in Medicine Meeting (2022).

M. Boudreau and A. Karakuzu, “Vendor-Neutral Applications for Quantitative MRI Quality Control”, Quality Conversations webinar series (2021).

M. Boudreau, “Highlighting Reproducibility: About MRM Highlights and reproducible research practices”, Member Initiated Symposium: ‘Reproducible MRI all over the world’, International Society for Magnetic Resonance in Medicine Meeting (2021).

M. Boudreau, “T1 Mapping Reproducibility Challenge: A Joint Collaboration Between the Reproducible Research and Quantitative MR Study Groups”, QUIERO Project (2020).

M. Boudreau, “T1 Mapping Reproducibility Challenge: A Joint Collaboration Between the Reproducible Research and Quantitative MR Study Groups”, International Society for Magnetic Resonance in Medicine Meeting (2020).

M. Boudreau, “Testing your code”, Talk, Secret Session: Mastering coding in your research environment, International Society for Magnetic Resonance in Medicine (2019).

M. Boudreau, “BIDS (Brain Imaging Data Structure) Extension from a Quantitative MRI Perspective, Outstanding Issues & Suggestions to Mitigate Them”, Joint Study Group Virtual Meeting – Reproducible Research & White Matter Study Groups, International Society for Magnetic Resonance in Medicine (2018).