%% Publications — Mathieu Boudreau
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@article{Boudreau_2025, title={Longitudinal reproducibility of brain and spinal cord quantitative MRI biomarkers}, volume={3}, ISSN={2837-6056}, url={http://dx.doi.org/10.1162/imag_a_00409}, DOI={10.1162/imag_a_00409}, journal={Imaging Neuroscience}, publisher={MIT Press}, author={Boudreau, Mathieu and Karakuzu, Agah and Boré, Arnaud and Pinsard, Basile and Zelenkovski, Kiril and Alonso-Ortiz, Eva and Boyle, Julie and Bellec, Lune and Cohen-Adad, Julien}, year={2025} }

@article{Papp_2024, title={<scp>RF</scp> shimming in the cervical spinal cord at <scp>7 T</scp>}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.30225}, DOI={10.1002/mrm.30225}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Papp, Daniel and Gilbert, Kyle M. and Cereza, Gaspard and D’Astous, Alexandre and Lopez‐Rios, Nibardo and Boudreau, Mathieu and Couch, Marcus J. and Yazdanbakhsh, Pedram and Barry, Robert L. and Alonso‐Ortiz, Eva and Cohen‐Adad, Julien}, year={2024}, month=Aug }

@article{Boudreau_2024, title={Repeat it without me: Crowdsourcing the T<sub>1</sub> mapping common ground via the ISMRM reproducibility challenge}, volume={92}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.30111}, DOI={10.1002/mrm.30111}, number={3}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Boudreau, Mathieu and Karakuzu, Agah and Cohen‐Adad, Julien and Bozkurt, Ecem and Carr, Madeline and Castellaro, Marco and Concha, Luis and Doneva, Mariya and Dual, Seraina A. and Ensworth, Alex and Foias, Alexandru and Fortier, Véronique and Gabr, Refaat E. and Gilbert, Guillaume and Glide‐Hurst, Carri K. and Grech‐Sollars, Matthew and Hu, Siyuan and Jalnefjord, Oscar and Jovicich, Jorge and Keskin, Kübra and Koken, Peter and Kolokotronis, Anastasia and Kukran, Simran and Lee, Nam G. and Levesque, Ives R. and Li, Bochao and Ma, Dan and Mädler, Burkhard and Maforo, Nyasha G. and Near, Jamie and Pasaye, Erick and Ramirez‐Manzanares, Alonso and Statton, Ben and Stehning, Christian and Tambalo, Stefano and Tian, Ye and Wang, Chenyang and Weiss, Kilian and Zakariaei, Niloufar and Zhang, Shuo and Zhao, Ziwei and Stikov, Nikola and }, year={2024}, month=May, pages={1115–1127} }

@article{Karakuzu_2024, title={Reproducible Research Practices in Magnetic Resonance Neuroimaging: A Review Informed by Advanced Language Models}, volume={23}, ISSN={1880-2206}, url={http://dx.doi.org/10.2463/mrms.rev.2023-0174}, DOI={10.2463/mrms.rev.2023-0174}, number={3}, journal={Magnetic Resonance in Medical Sciences}, publisher={Japanese Society for Magnetic Resonance in Medicine}, author={Karakuzu, Agah and Boudreau, Mathieu and Stikov, Nikola}, year={2024}, pages={252–267} }

@article{Poldrack_2024, title={The past, present, and future of the brain imaging data structure (BIDS)}, volume={2}, ISSN={2837-6056}, url={http://dx.doi.org/10.1162/imag_a_00103}, DOI={10.1162/imag_a_00103}, journal={Imaging Neuroscience}, publisher={MIT Press}, author={Poldrack, Russell A. and Markiewicz, Christopher J. and Appelhoff, Stefan and Ashar, Yoni K. and Auer, Tibor and Baillet, Sylvain and Bansal, Shashank and Beltrachini, Leandro and Benar, Christian G. and Bertazzoli, Giacomo and Bhogawar, Suyash and Blair, Ross W. and Bortoletto, Marta and Boudreau, Mathieu and Brooks, Teon L. and Calhoun, Vince D. and Castelli, Filippo Maria and Clement, Patricia and Cohen, Alexander L. and Cohen-Adad, Julien and D’Ambrosio, Sasha and de Hollander, Gilles and de la Iglesia-Vayá, María and de la Vega, Alejandro and Delorme, Arnaud and Devinsky, Orrin and Draschkow, Dejan and Duff, Eugene Paul and DuPre, Elizabeth and Earl, Eric and Esteban, Oscar and Feingold, Franklin W. and Flandin, Guillaume and Galassi, Anthony and Gallitto, Giuseppe and Ganz, Melanie and Gau, Rémi and Gholam, James and Ghosh, Satrajit S. and Giacomel, Alessio and Gillman, Ashley G. and Gleeson, Padraig and Gramfort, Alexandre and Guay, Samuel and Guidali, Giacomo and Halchenko, Yaroslav O. and Handwerker, Daniel A. and Hardcastle, Nell and Herholz, Peer and Hermes, Dora and Honey, Christopher J. and Innis, Robert B. and Ioanas, Horea-Ioan and Jahn, Andrew and Karakuzu, Agah and Keator, David B. and Kiar, Gregory and Kincses, Balint and Laird, Angela R. and Lau, Jonathan C. and Lazari, Alberto and Legarreta, Jon Haitz and Li, Adam and Li, Xiangrui and Love, Bradley C. and Lu, Hanzhang and Marcantoni, Eleonora and Maumet, Camille and Mazzamuto, Giacomo and Meisler, Steven L. and Mikkelsen, Mark and Mutsaerts, Henk and Nichols, Thomas E. and Nikolaidis, Aki and Nilsonne, Gustav and Niso, Guiomar and Norgaard, Martin and Okell, Thomas W. and Oostenveld, Robert and Ort, Eduard and Park, Patrick J. and Pawlik, Mateusz and Pernet, Cyril R. and Pestilli, Franco and Petr, Jan and Phillips, Christophe and Poline, Jean-Baptiste and Pollonini, Luca and Raamana, Pradeep Reddy and Ritter, Petra and Rizzo, Gaia and Robbins, Kay A. and Rockhill, Alexander P. and Rogers, Christine and Rokem, Ariel and Rorden, Chris and Routier, Alexandre and Saborit-Torres, Jose Manuel and Salo, Taylor and Schirner, Michael and Smith, Robert E. and Spisak, Tamas and Sprenger, Julia and Swann, Nicole C. and Szinte, Martin and Takerkart, Sylvain and Thirion, Bertrand and Thomas, Adam G. and Torabian, Sajjad and Varoquaux, Gael and Voytek, Bradley and Welzel, Julius and Wilson, Martin and Yarkoni, Tal and Gorgolewski, Krzysztof J.}, year={2024}, month=Mar }

@article{Karakuzu_2021, title={qMRI-BIDS: an extension to the brain imaging data structure for quantitative magnetic resonance imaging data}, url={http://dx.doi.org/10.1101/2021.10.22.21265382}, DOI={10.1101/2021.10.22.21265382}, publisher={openRxiv}, author={Karakuzu, Agah and Appelhoff, Stefan and Auer, Tibor and Boudreau, Mathieu and Feingold, Franklin and Khan, Ali R. and Lazari, Alberto and Markiewicz, Christopher J. and Mulder, Martijn J. and Phillips, Christophe and Salo, Taylor and Stikov, Nikola and Whitaker, Kirstie and de Hollander, Gilles}, year={2021}, month=Oct }

@article{Lousada_2021, title={Reduced Axon Calibre in the Associative Striatum of the Sapap3 Knockout Mouse}, volume={11}, ISSN={2076-3425}, url={http://dx.doi.org/10.3390/brainsci11101353}, DOI={10.3390/brainsci11101353}, number={10}, journal={Brain Sciences}, publisher={MDPI AG}, author={Lousada, Eliana and Boudreau, Mathieu and Cohen-Adad, Julien and Nait Oumesmar, Brahim and Burguière, Eric and Schreiweis, Christiane}, year={2021}, month=Oct, pages={1353} }

@article{Wong_2021, title={A simple and robust method for automating analysis of naïve and regenerating peripheral nerves}, url={http://dx.doi.org/10.1101/2021.02.25.432836}, DOI={10.1101/2021.02.25.432836}, publisher={openRxiv}, author={Wong, Alison L. and Hricz, Nicholas and Malapati, Harsha and von Guionneau, Nicholas and Wong, Michael and Harris, Thomas and Boudreau, Mathieu and Cohen-Adad, Julien and Tuffaha, Sami}, year={2021}, month=Feb }

@article{Karakuzu_2020, title={qMRLab: Quantitative MRI analysis, under one umbrella}, volume={5}, ISSN={2475-9066}, url={http://dx.doi.org/10.21105/joss.02343}, DOI={10.21105/joss.02343}, number={53}, journal={Journal of Open Source Software}, publisher={The Open Journal}, author={Karakuzu, Agah and Boudreau, Mathieu and Duval, Tanguy and Boshkovski, Tommy and Leppert, Ilana and Cabana, Jean-François and Gagnon, Ian and Beliveau, Pascale and Pike, G. and Cohen-Adad, Julien and Stikov, Nikola}, year={2020}, month=Sept, pages={2343} }

@article{Boudreau_2018, title={Sensitivity regularization of the Cramér‐Rao lower bound to minimize B<sub>1</sub> nonuniformity effects in quantitative magnetization transfer imaging}, volume={80}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.27337}, DOI={10.1002/mrm.27337}, number={6}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Boudreau, Mathieu and Pike, G. Bruce}, year={2018}, month=May, pages={2560–2572} }

@article{Campbell_2018, title={Promise and pitfalls of g-ratio estimation with MRI}, volume={182}, ISSN={1053-8119}, url={http://dx.doi.org/10.1016/j.neuroimage.2017.08.038}, DOI={10.1016/j.neuroimage.2017.08.038}, journal={NeuroImage}, publisher={Elsevier BV}, author={Campbell, Jennifer S.W. and Leppert, Ilana R. and Narayanan, Sridar and Boudreau, Mathieu and Duval, Tanguy and Cohen-Adad, Julien and Pike, G. Bruce and Stikov, Nikola}, year={2018}, month=Nov, pages={80–96} }

@article{Boudreau_2017, title={B<sub>1</sub>‐sensitivity analysis of quantitative magnetization transfer imaging}, volume={79}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.26673}, DOI={10.1002/mrm.26673}, number={1}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Boudreau, Mathieu and Stikov, Nikola and Pike, G. Bruce}, year={2017}, month=Mar, pages={276–285} }

@article{Boudreau_2017, title={B<sub>1</sub> mapping for bias‐correction in quantitative <i>T</i><sub>1</sub> imaging of the brain at 3T using standard pulse sequences}, volume={46}, ISSN={1522-2586}, url={http://dx.doi.org/10.1002/jmri.25692}, DOI={10.1002/jmri.25692}, number={6}, journal={Journal of Magnetic Resonance Imaging}, publisher={Wiley}, author={Boudreau, Mathieu and Tardif, Christine L. and Stikov, Nikola and Sled, John G. and Lee, Wayne and Pike, G. Bruce}, year={2017}, month=Mar, pages={1673–1682} }

@article{Cabana_2015, title={Quantitative magnetization transfer imaging <i>made</i> easy with <i>q</i><scp>MTL</scp><i>ab</i>: Software for data simulation, analysis, and visualization}, volume={44A}, ISSN={1552-5023}, url={http://dx.doi.org/10.1002/cmr.a.21357}, DOI={10.1002/cmr.a.21357}, number={5}, journal={Concepts in Magnetic Resonance Part A}, publisher={Wiley}, author={Cabana, Jean‐François and Gu, Ye and Boudreau, Mathieu and Levesque, Ives R and Atchia, Yaaseen and Sled, John G. and Narayanan, Sridar and Arnold, Douglas L. and Pike, G. Bruce and Cohen‐Adad, Julien and Duval, Tanguy and Vuong, Manh‐Tung and Stikov, Nikola}, year={2015}, month=Sept, pages={263–277} }

@article{Stikov_2015, title={In vivo histology of the myelin g-ratio with magnetic resonance imaging}, volume={118}, ISSN={1053-8119}, url={http://dx.doi.org/10.1016/j.neuroimage.2015.05.023}, DOI={10.1016/j.neuroimage.2015.05.023}, journal={NeuroImage}, publisher={Elsevier BV}, author={Stikov, Nikola and Campbell, Jennifer S.W. and Stroh, Thomas and Lavelée, Mariette and Frey, Stephen and Novek, Jennifer and Nuara, Stephen and Ho, Ming-Kai and Bedell, Barry J. and Dougherty, Robert F. and Leppert, Ilana R. and Boudreau, Mathieu and Narayanan, Sridar and Duval, Tanguy and Cohen-Adad, Julien and Picard, Paul-Alexandre and Gasecka, Alicja and Côté, Daniel and Pike, G. Bruce}, year={2015}, month=Sept, pages={397–405} }

@article{Stikov_2015, title={Quantitative analysis of the myelin g -ratio from electron microscopy images of the macaque corpus callosum}, volume={4}, ISSN={2352-3409}, url={http://dx.doi.org/10.1016/j.dib.2015.05.019}, DOI={10.1016/j.dib.2015.05.019}, journal={Data in Brief}, publisher={Elsevier BV}, author={Stikov, Nikola and Campbell, Jennifer S.W. and Stroh, Thomas and Lavelée, Mariette and Frey, Stephen and Novek, Jennifer and Nuara, Stephen and Ho, Ming-Kai and Bedell, Barry J. and Dougherty, Robert F. and Leppert, Ilana R. and Boudreau, Mathieu and Narayanan, Sridar and Duval, Tanguy and Cohen-Adad, Julien and Picard, Paul-Alexandre and Gasecka, Alicja and Côté, Daniel and Pike, G. Bruce}, year={2015}, month=Sept, pages={368–373} }

@article{Stikov_2014, title={On the accuracy of T<sub>1</sub> mapping: Searching for common ground}, volume={73}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.25135}, DOI={10.1002/mrm.25135}, number={2}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Stikov, Nikola and Boudreau, Mathieu and Levesque, Ives R. and Tardif, Christine L. and Barral, Joëlle K. and Pike, G. Bruce}, year={2014}, month=Feb, pages={514–522} }

@article{Boudreau_2012, title={Measurement of <sup>129</sup>Xe gas apparent diffusion coefficient anisotropy in an elastase‐instilled rat model of emphysema}, volume={69}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.24224}, DOI={10.1002/mrm.24224}, number={1}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Boudreau, Mathieu and Xu, Xiaojun and Santyr, Giles E.}, year={2012}, month=Feb, pages={211–220} }

@article{Xu_2011, title={Mapping of <sup>3</sup>He apparent diffusion coefficient anisotropy at sub‐millisecond diffusion times in an elastase‐instilled rat model of emphysema}, volume={67}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.23098}, DOI={10.1002/mrm.23098}, number={4}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Xu, Xiaojun and Boudreau, Mathieu and Ouriadov, Alexei and Santyr, Giles E.}, year={2011}, month=Aug, pages={1146–1153} }

@article{Beydaghyan_2011, title={Optical properties and electrochromic response of nanostructured molybdenum trioxide films}, volume={26}, ISSN={2044-5326}, url={http://dx.doi.org/10.1557/jmr.2010.43}, DOI={10.1557/jmr.2010.43}, number={1}, journal={Journal of Materials Research}, publisher={Springer Science and Business Media LLC}, author={Beydaghyan, G. and Boudreau, M. and Ashrit, P.V.}, year={2011}, month=Jan, pages={55–61} }

@article{Beydaghyan_2010, title={Single-material multilayer with enhanced photoactivity}, volume={97}, ISSN={1077-3118}, url={http://dx.doi.org/10.1063/1.3502480}, DOI={10.1063/1.3502480}, number={16}, journal={Applied Physics Letters}, publisher={AIP Publishing}, author={Beydaghyan, Gisia and Boudreau, Mathieu and Riordon, Jason and Haché, Alain and Ashrit, P. V.}, year={2010}, month=Oct }

@article{Boudreau_2022, title={On the open‐source landscape of <i>Magnetic Resonance in Medicine</i>}, volume={88}, ISSN={1522-2594}, url={http://dx.doi.org/10.1002/mrm.29366}, DOI={10.1002/mrm.29366}, number={4}, journal={Magnetic Resonance in Medicine}, publisher={Wiley}, author={Boudreau, Mathieu and Stikov, Nikola and Jezzard, Peter}, year={2022}, month=July, pages={1495–1497} }

@article{Boudreau_2021, title={On the open-source landscape of PLOS Computational Biology}, volume={17}, ISSN={1553-7358}, url={http://dx.doi.org/10.1371/journal.pcbi.1008725}, DOI={10.1371/journal.pcbi.1008725}, number={2}, journal={PLOS Computational Biology}, publisher={Public Library of Science (PLoS)}, author={Boudreau, Mathieu and Poline, Jean-Baptiste and Bellec, Pierre and Stikov, Nikola}, year={2021}, month=Feb, pages={e1008725} }

@article{Boudreau_2020, title={Editorial for “Scan<b>–</b>Rescan Repeatability and Impact of B<sub>0</sub> and B<sub>1</sub> Field Nonuniformity Corrections in Single‐Point Whole‐Brain Macromolecular Proton Fraction Mapping”}, volume={52}, ISSN={1522-2586}, url={http://dx.doi.org/10.1002/jmri.27088}, DOI={10.1002/jmri.27088}, number={3}, journal={Journal of Magnetic Resonance Imaging}, publisher={Wiley}, author={Boudreau, Mathieu}, year={2020}, month=Feb, pages={954–955} }

@article{Karakuzu_2022, title={NeuroLibre : A preprint server for full-fledged reproducible neuroscience}, url={http://dx.doi.org/10.31219/osf.io/h89js}, DOI={10.31219/osf.io/h89js}, publisher={Center for Open Science}, author={Karakuzu, Agah and DuPre, Elizabeth and Tetrel, Loic and Bermudez, Patrick and Boudreau, Mathieu and Chin, Mary and Poline, Jean-Baptiste and Das, Samir and Bellec, Lune and Stikov, Nikola}, year={2022}, month=Apr }